Anaerobic Fungi Genomes: Most of the sequenced anaerobic fungi (Neocallimastigomycetes) genomes  that are publically available can be downloaded from the U.S. Dept. of Energy Joint Genome Institute (JGI).  JGI hosts Mycocosm, which is a web platform to analyze and compare genomes across the fungal kingdom. Draft genomes are improved upon and updated frequently. Please note you need to create an account (at no charge) in order to be able to download data.