Anaerobic Fungal ITS1 Database: A database for the assignment of anaerobic fungal ITS1 next-generation sequence reads (compatible with Mothur and QIIME) as described in the paper by Koetschan et al (2014)  is freely accessible from this website (please just cite this paper when using it: Koetschan et al (2014) Internal Transcribed Spacer 1 Secondary Structure Analysis Reveals a Common Core throughout the Anaerobic Fungi (Neocallimastigomycota). PLOS One 9 (3), e91928. DOI: 10.1371/journal.pone.0091928 ). The current version of the database (which includes 18 currently characterized genera) is version 3.5 (released February 2020) and the files can be downloaded here: database v3.5 & taxonomy v3.5. Details of the new entries relative to version 3.4 can be found here. PLEASE NOTE A NEW DATABASE FOR ITS1 AND LSU WILL BE LAUNCHED IN 2021

Anaerobic Fungal ITS1 Secondary Structure Prediction: Access to the tool as described in the paper by Koetschan et al (2014) Internal Transcribed Spacer 1 Secondary Structure Analysis Reveals a Common Core throughout the Anaerobic Fungi (Neocallimastigomycota). PLOS One. DOI: 10.1371/journal.pone.0091928

Anaerobic Fungi Genomes: Most of the sequenced anaerobic fungi (Neocallimastigomycetes) genomes  that are publically available can be downloaded from the U.S. Dept. of Energy Joint Genome Institute (JGI).  JGI hosts Mycocosm, which is a web platform to analyze and compare genomes across the fungal kingdom. Draft genomes are improved upon and updated frequently. Please note you need to create an account (at no charge) in order to be able to download data.